Change institution

Bioinformatics Course – NGS Analytical Pipeline Design and Management

WHEN: December 4–5, 2017
WHERE: Biology park, University Campus Bohunice, Brno
 

Abstract

New generation sequencing (NGS) is becoming a method of choice for an ever growing number of applications in both research and clinics. However, subsequent NGS data analysis still creates a backlog in the process, since designing appropriate analytical pipeline tailored to the data is a daunting task. In this course we will present standard  logical steps and reasoning behind a creation of analytical pipelines for the most common NGS experiments. The course will also address the problem of organising and managing analytical workflows in order to maintain a sustainable bioinformatics service.

Speakers:

  • Charles Girardot - EMBL
  • Tobias Rausch - EMBL
  • Jonathan Landry - EMBL
  • Jan Provaznik - EMBL
  • Vojtech Bystry - CEITEC
  • Jan Oppelt - CEITEC

Programme

Monday, December 4
9:00-9:15 Introduction
9:15-10:00 Immunoglobulin NGS Analysis
10:00-10:30 Genome Assembly and Long Read Sequencing
10:30-11:00 Coffee Break
11:00-11:45 CHIP-seq analysis
11:45-12:30 RNAseq Analysis
12:30-14:00 Lunch
14:00-14:45 Cancer Genomics Analysis - Variant Calling
14:45-15:15 Coffee Break
15:15-16:00 Cancer Genomics Analysis - Variant Calling
18:00 Dinner + Discussion in CEITEC Atrium

 

Tuesday, December 5
9:00-9:45 Lims Problematic
9:45-10:30 Bioinformatics Workflow Management with Snakemake
10:30-11:00 Coffee Break
11:00-12:00 Galaxy Server

Registration is closed

 

 

More CEITEC News ...
Dr. Ondrej Hovorka: Models of magnetic nanoparticles for biomedical applications

29. ledna 2018 9:46

Dr. Ondrej Hovorka: Models of magnetic nanoparticles for biomedical…

LECTURE: Dr. Ondrej Hovorka: Models of magnetic nanoparticles for biomedical applications

Advanced Materials and Nanotechnology Seminar Series 2018: Dr Andriy Marko

25. ledna 2018 18:21

Advanced Materials and Nanotechnology Seminar Series 2018: Dr Andriy…

WHEN: 30. 01. 2018 WHERE: CEITEC BUT, Purkynova 123, large meeting room SPEAKER: Dr Andriy Marko TALK: Advances in PELDOR…